Some cached map services in Data Appliance for ArcGIS does not overlap with the 'ESRI_World_Transportation_2D' service after the first zoom level in Web Mapping APIs and JAVA ADF application.
This issue is not reproducible in the current release of the software. If you are encountering this issue, please contact Esri Technical Support (for customers in the United States) or your Esri distributor (for customers outside the United States) to resolve this issue.