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Clear Cache Options in ArcGIS Server for the Java Platform do not affect the cache settings for REST API if updated from REST API Admin: http://<host>:8399/arcgis/rest/admin.
This bug is specific for Java Platform for ArcGIS Server. The .NET Platform updates the cache just fine.
The REST API cache information settings do not come into effect or update the rest-config.properties file if changing the mode from manual to periodic or scheduled from REST Admin.
The cause is unknown.
As a workaround, the settings can be updated manually. Follow the steps below to update the Clear Cache settings for REST API.
The interval is specified in minutes.
For more details about configuring the REST cache options, refer to the Configuring the REST API Help page.