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During the ArcIMS Post Installation, after you click Next on the dialog box for the Web server - servlet engine configuration, an error message may occur:
"Tomcat.exe - Application Error"
During the Web server - servlet engine configuration Tomcat gets updated to deploy the ArcIMS Servlet Connector, the Service Administrator, and if installed, also the Metadata Explorer as Web applications. If the Tomcat service is already running, it has a problem with the deployment and Tomcat errors out.