Summary
In some GIS projects, it is necessary to combine multiple non-contiguous polygons into a single polygon without altering their spatial distribution. This is useful in spatial analysis where there is a need for scattered entities to be grouped under a common administrative, management, or analytical unit.
In ArcGIS Pro, the Merge tool does not merge polygons into a single geometric entity; rather, it groups them into a single layer while maintaining each polygon as a separate feature. On the other hand, the Dissolve tool can help in this process, but it generally requires contiguous entities to generate a single geometry.
The images below show the original polygons and the expected output (outlined)


Procedure
Below are the step-by-step instructions to create a single polygon from non-contiguous polygons in ArcGIS Pro.
- Run the Aggregate Polygons (Cartography) geoprocessing tool.
- Click Analysis > Tools to open the Geoprocessing pane in ArcGIS Pro.
- Search for the Aggregate Polygons (Cartography) tool and click it.
- Configure the parameters in the Aggregate Polygons pane.
- Select the layer containing the polygons data for Input Features.
- Specify the value and unit for Aggregation Distance. This distance should be the maximum distance value between the polygons.

- Click Run.
The image below shows the output of this tool:

If your polygons don't have gaps inside, you can stop at this step. However, if the polygon still has gaps, proceed to the next step.
- Run the Eliminate Polygon Part (Data Management) geoprocessing tool to eliminate the gaps.
- Click Analysis > Tools to open the Geoprocessing pane in ArcGIS Pro.
- Search for the Eliminate Polygon Part (Data Management) tool and click it.
- Configure the parameters in the Eliminate Polygon Part pane.
- Select the layer containing the polygons data for Input Features. In this case, the result from step 1.
- For Condition, click the drop-down menu and select how the holes are to be eliminated. In this example, Area is selected.
- For Area, specify an area bigger than the area of the holes to be filled and select the unit from the drop-down list. In this example, Square Kilometers is selected. Refer to How To: Calculate the area of holes in a polygon feature in ArcGIS Pro to calculate the area of the holes.
- Uncheck the Eliminate contained parts only check box.

- Click Run
In the image below shows a large polygon without gaps inside.
