Clipping a NetCDF raster layer using the Clip tool gives incorrect pixel values for the clipped output

Description

Using the NetCDF raster layer as input to the raster clip geoprocessing tool gives incorrect pixel values for the clipped output.

Cause

This is a known issue.

Workaround

• Use the Extract by Rectangle tool (Spatial Analyst Tools > Extraction) on the NetCDF raster layer. This works fine and gives the correct pixel values for the clipped output.
  
  
• Export the NetCDF raster layer into a permanent raster and use the Clip tool. This gives the correct pixel values for the output.