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Versions containing network features may cause ArcMap to fatal on Reconile. This issue has a very limited scope, the majority of users will not encounter this issue.
This issue is the result of a conflict between junctions in the parent and child versions. It will manifest with ArcGIS 8.1 Service Pack 1 with the Geodatabase Patch version 2 or with ArcGIS 8.1.2
This issue has been resolved at ArcGIS 8.2.
The only solution to this issue is to apply the patch relevant to your version of ArcGIS. Under the Related Information section, download the zip file containing the patch and the installation instructions. After installing the patch, run Reconcile on the affected version.